Cloud Engineer / Bioinformatician (m/w/d)

„Research for a life without cancer“ is our mission at the German Cancer Research Center. We investigate how cancer develops, identify cancer risk factors and look for new cancer prevention strategies. We develop new methods with which tumors can be diagnosed more precisely and cancer patients can be treated more successfully. Every contribution counts – whether in research, administration, or infrastructure. This is what makes our daily work so meaningful and exciting. Are you passionate about shaping the future of biomedical research and contributing to the understanding of human health on a global scale? TheGerman Human Genome-Phenome Archive (GHGA ) is seeking a motivated individual to join our team at the German Cancer Research Center (DKFZ) in Heidelberg as a Cloud Engineer / Bioinformatician (m/w/d) Reference number: 2024-0353 * Heidelberg * Full-time * German Human Genome-Phenome Archive The German Human Genome-Phenome Archive (GHGA) is part of the national program for research data infrastructures (NFDI). The position provides an exciting opportunity to work at the inter­section of bioinformatics, cloud engineering, and global health data initiatives, contributing to impactful projects with high societal value. The role will also contribute to Trusted Research Environment (TRE) efforts in collaboration with the NAKO Health Study, Germany’s largest cohort research initiative. The activities are closely coor­dinated with leading international initiatives and networks, such as the European Genomics Data Infra­structure (GDI), and the Global Alliance for Genomics and Health (GA4GH). This infrastructure will support genomics data hubs with software tools for secure storage, interactive data portals with data visualization, and streamlined data deposition and acquisition solutions. The GHGA main office, which is coordinated by Prof. Oliver Stegle (Division of Computational Genomics and Systems Genetics), is located at DKFZ in close coor­dination with the European Mole­cular Biology Laboratory (EMBL, Prof. Jan Korbel). As GHGA grows and matures, we look forward to extending its functionality from an archive to a batteries-included research platform for the next generation of omics research. We are looking for a software developer to help us succeed in this push. The successful candidate will be part of an interdisciplinary research and data management team developing and applying a diverse range of state-of-the-art methodology to implement and maintain bioinformatics workflows in a cloud compute environment. The role will involve close cooperation with other partners in the GHGA network, as well as international networks and initiatives. Your Tasks * Design and develop cloud-based software architectures * Workflow development and maintenance of omics data * Improvement of bioinfor­matics workflows with respect to performance and stability * Testing / benchmarking work­flows with cloud deploy­ments * Development of cloud images for (human) bioinformatics * Develop, test, and maintain genomics web services in accordance with GA4GH standards * Collaboration with local and international scientific software developers We offer the opportunity to help shape one of the most important emerging scientific data infra­structures for the storage and exchange of omics data in Germany. Your Profile * PhD in computer science, mathematics, physics, bioinformatics, computational biology or a similar back­ground with a focus on bioinformatics or data science; alternatively M.Sc. or equivalent qualification with complementary years of relevant experience * Proficiency and hands-on experience in running and building DNA, RNA and other omics data analysis pipelines including QC steps using workflow languages (Nextflow or Snakemake) * Familiarity with Git version control system * Experience with one or more of these software technologies: containers (like Docker or Singularity), package managers, and parallel computing / HPC * Familiarity with deployments on public cloud providers (Azure, AWS, GCP etc.) or OpenStack * Proficiency with UNIX-based systems and relevant programming languages such as Python or R is a prerequisite * Expertise in software development and cloud computing is beneficial The ideal applicant should have demonstrated the ability to work independently and creatively. The candidate should have excellent communication skills and be able to articulate clearly the technical needs, set clear goals, and work within an interdisciplinary setting, communicating with other partners. YOUR POSSIBILITIES * Shape one of Germany’s most important scientific data infrastructures * Contribute to interdisciplinary efforts, bridging cutting-edge research with clinical applications * Get exposed to a plethora of fields ranging from AI-guided clinical decision-making to modern web development technologies * Work with an interdisciplinary team of experts bringing state-of-the-art biomedical research closer to clinics and patients * Take part in international organizations such as the Global Alliance for Genomics and Health (GA4GH) , theEuropean Genome Phenome Archive (EGA) andELIXIR shaping the future of genomics across borders * Widen your expertise with extensive possibilities of training programs, seminars, and conferences We Offer * Excellent framework conditions: state-of-the-art equipment and oppor­tunities for inter­national networking at the highest level * 30 days of vacation per year * Flexible working hours * Remuneration according to TV-L incl. occupational Pension plan and capital-forming payments * Possibility of mobile work and part-time work * Family-friendly working environ­ment * Sustainable travel to work: subsidized Germany job ticket * Unleash your full potential: targeted offers for your personal develop­ment promote your talents * Our Corporate Health Manage­ment Program offers a holistic approach to your well-being Contact: Dr. Pascal Kraft Telefon: +49 6221 42-3601 The position is initially limited to 2 years with the possibility of prolongation. Are you interested? Then become part of the DKFZ and join us in contributing to a life without cancer! Apply now We are convinced that an innovative research and working environment thrives on the diversity of its employees. Therefore, we welcome applications from talented people, regardless of gender, cultural background, nationality, ethnicity, sexual identity, physical ability, religion and age. People with severe disabilities are given preference if they have the same aptitude. Notice: We are subject to the regulations of the Infection Protection Act (IfSG). Therefore, all our employees must provide proof of immunity against measles. Share this job! Deutsches Krebsforschungszentrum | Im Neuenheimer Feld 280 | 69120 Heidelberg | www.dkfz.de